chemicalchecker.tool.hotnet.hotnet.Hotnet

class Hotnet(cpu=1)

Bases: object

Hotnet class.

Methods

choose_beta	Call external python with given parameters.
create_similarity_matrix	Call external python with given parameters.

choose_beta(i, o, **kwargs)

Call external python with given parameters.

Parameters:

• i – Input Edge list filename

• o – Output data path

create_similarity_matrix(i, o, **kwargs)

Call external python with given parameters.

Parameters:

• i – Input Edge list filename

• o – Output data path (default:’similarity_matrix.h5’)

• b – Beta (Restart probability). Default is 128 (default:0.0)